Sir2-Independent Life Span Extension by Calorie Restriction in Yeast

Abstract: Calorie restriction slows aging and increases life span in many organisms.

Abstract: In yeast, a mechanistic explanation has been proposed whereby calorie restriction slows aging by activating Sir2.

Abstract: Here we report the identification of a Sir2-independent pathway responsible for a majority of the longevity benefit associated with calorie restriction.

Abstract: Deletion of FOB1 and overexpression of SIR2 have been previously found to increase life span by reducing the levels of toxic rDNA circles in aged mother cells.

Abstract: We find that combining calorie restriction with either of these genetic interventions dramatically enhances longevity, resulting in the longest-lived yeast strain reported thus far.

Abstract: Further, calorie restriction results in a greater life span extension in cells lacking both Sir2 and Fob1 than in cells where Sir2 is present.

Abstract: These findings indicate that Sir2 and calorie restriction act in parallel pathways to promote longevity in yeast and, perhaps, higher eukaryotes.


The Effect of Submaximal Exercise Preceded by Single Whole-Body Cryotherapy on the Markers of Oxidative Stress and Inflammation in Blood of Volleyball Players

Abstract: The aim of the study was to determine the effect of single whole-body cryotherapy (WBC) session applied prior to submaximal exercise on the activity of antioxidant enzymes, the concentration of lipid peroxidation products, total oxidative status, and the level of cytokines in blood of volleyball players.

Abstract: The study group consisted of 18 male professional volleyball players, who were subjected to extremely cold air (-130°C) prior to exercise performed on cycloergometer.

Abstract: Blood samples were taken five times: before WBC, after WBC procedure, after exercise preceded by cryotherapy (WBC exercise), and before and after exercise without WBC (control exercise).

Abstract: The activity of catalase statistically significantly increased after control exercise.

Abstract: Moreover, the activity of catalase and superoxide dismutase was lower after WBC exercise than after control exercise (P < 0.001).

Abstract: After WBC exercise, the level of IL-6 and IL-1β was also lower (P < 0.001) than after control exercise.

Abstract: The obtained results may suggest that cryotherapy prior to exercise may have some antioxidant and anti-inflammatory properties.

Abstract: The relations between the level of studied oxidative stress and inflammatory markers may testify to the contribution of reactive oxygen species in cytokines release into the blood system in response to exercise and WBC.


Incidence of childhood distal forearm fractures over 30 years: a population-based study.

Abstract: CONTEXT The incidence of distal forearm fractures in children peaks around the time of the pubertal growth spurt, possibly because physical activity increases at the time of a transient deficit in cortical bone mass due to the increased calcium demand during maximal skeletal growth.

Abstract: Changes in physical activity or diet may therefore influence risk of forearm fracture.

Abstract: OBJECTIVE To determine whether there has been a change in the incidence of distal forearm fractures in children in recent years.

Abstract: DESIGN, SETTING, AND PATIENTS Population-based study among Rochester, Minn, residents younger than 35 years with distal forearm fractures in 1969-1971, 1979-1981, 1989-1991, and 1999-2001.

Abstract: MAIN OUTCOME MEASURE Estimated incidence of distal forearm fractures in 4 time periods.

Abstract: RESULTS Comparably age- and sex-adjusted annual incidence rates per 100 000 increased from 263.3 (95% confidence interval [CI], 231.1-295.4) in 1969-1971 to 322.3 (95% CI, 285.3-359.4) in 1979-1981 and to 399.8 (95% CI, 361.0-438.6) in 1989-1991 before leveling off at 372.9 (95% CI, 339.1-406.7) in 1999-2001.

Abstract: Age-adjusted incidence rates per 100 000 were 32% greater among male residents in 1999-2001 compared with 1969-1971 (409.4 [95% CI, 359.9-459.0] vs 309.4 [95% CI, 259.3-359.5]; P =.01) and 56% greater among female residents in the same time periods (334.3 [95% CI, 288.6-380.1] vs 214.6 [95% CI, 174.9-254.4]; P<.001).

Abstract: The peak incidence and greatest increase occurred between ages 11 and 14 years in boys and 8 and 11 years in girls.

Abstract: CONCLUSIONS There has been a statistically significant increase in the incidence of distal forearm fractures in children and adolescents, but whether this is due to changing patterns of physical activity, decreased bone acquisition due to poor calcium intake, or both is unclear at present.

Abstract: Given the large number of childhood fractures, however, studies are needed to define the cause(s) of this increase.


Tolerance of whole-genome doubling propagates chromosomal instability and accelerates cancer genome evolution.

Abstract: UNLABELLED The contribution of whole-genome doubling to chromosomal instability (CIN) and tumor evolution is unclear.

Abstract: We use long-term culture of isogenic tetraploid cells from a stable diploid colon cancer progenitor to investigate how a genome-doubling event affects genome stability over time.

Abstract: Rare cells that survive genome doubling demonstrate increased tolerance to chromosome aberrations.

Abstract: Tetraploid cells do not exhibit increased frequencies of structural or numerical CIN per chromosome.

Abstract: However, the tolerant phenotype in tetraploid cells, coupled with a doubling of chromosome aberrations per cell, allows chromosome abnormalities to evolve specifically in tetraploids, recapitulating chromosomal changes in genomically complex colorectal tumors.

Abstract: Finally, a genome-doubling event is independently predictive of poor relapse-free survival in early-stage disease in two independent cohorts in multivariate analyses [discovery data: hazard ratio (HR), 4.70, 95% confidence interval (CI), 1.04-21.37; validation data: HR, 1.59, 95% CI, 1.05-2.42].

Abstract: These data highlight an important role for the tolerance of genome doubling in driving cancer genome evolution.

Abstract: SIGNIFICANCE Our work sheds light on the importance of whole-genome–doubling events in colorectal cancer evolution.

Abstract: We show that tetraploid cells undergo rapid genomic changes and recapitulate the genetic alterations seen in chromosomally unstable tumors.

Abstract: Furthermore, we demonstrate that a genome-doubling event is prognostic of poor relapse-free survival in this disease type.


Alzheimer’s Disease Risk Gene CD33 Inhibits Microglial Uptake of Amyloid Beta

Abstract: The transmembrane protein CD33 is a sialic acid-binding immunoglobulin-like lectin that regulates innate immunity but has no known functions in the brain.

Abstract: We have previously shown that the CD33 gene is a risk factor for Alzheimer's disease (AD).

Abstract: Here, we observed increased expression of CD33 in microglial cells in AD brain.

Abstract: The minor allele of the CD33 SNP rs3865444, which confers protection against AD, was associated with reductions in both CD33 expression and insoluble amyloid beta 42 (Aβ42) levels in AD brain.

Abstract: Furthermore, the numbers of CD33-immunoreactive microglia were positively correlated with insoluble Aβ42 levels and plaque burden in AD brain.

Abstract: CD33 inhibited uptake and clearance of Aβ42 in microglial cell cultures.

Abstract: Finally, brain levels of insoluble Aβ42 as well as amyloid plaque burden were markedly reduced in APP(Swe)/PS1(ΔE9)/CD33(-/-) mice.

Abstract: Therefore, CD33 inactivation mitigates Aβ pathology and CD33 inhibition could represent a novel therapy for AD.


Aluminum fluoride stimulates surface protrusions in cells overexpressing the ARF6 GTPase

Abstract: To study the effector function of the ADP- ribosylation factor (ARF) 6 GTP-binding protein, we transfected HeLa cells with wild-type, epitope-tagged ARF6.

Abstract: Previously shown to indirectly activate the ARF1 GTPase, aluminum fluoride (AIF) treatment of ARF6-transfected cells resulted in a redistribution of both ARF6 and actin to discrete sites on the plasma membrane, which became increasingly protrusive over time.

Abstract: The effects of AIF were reversible, specific to cells transfected with wild-type ARF6, and resembled the cellular protrusions observed in cells expressing the GTPase defective mutant of ARF6.

Abstract: Importantly, the protrusions observed in cells transfected with ARF6 were distinct from the enhanced stress fibers and membrane ruffles observed in cells transfected with RhoA and Rac1, respectively.

Abstract: In cells forming protrusions, there was an apparent stimulation of macropinocytosis and membrane recycling within the protrusive structures.

Abstract: In contrast, no block in transferrin uptake or alteration of the distribution of clathrin AP-2 complexes was detected in these cells.

Abstract: The AIF-induced, ARF6- dependent formation of protrusive structures was blocked by cytochalasin D and inhibitors of the lipoxygenase pathway.

Abstract: These observations support a novel role for the ARF6 GTPase in modeling the plasma membrane and underlying cytoskeleton.


A longitudinal diffusion tensor imaging study assessing white matter fiber tracts after sports-related concussion.

Abstract: The extent of structural injury in sports-related concussion (SRC) is central to the course of recovery, long-term effects, and the decision to return to play.

Abstract: In the present longitudinal study, we used diffusion tensor imaging (DTI) to assess white matter (WM) fiber tract integrity within 2 days, 2 weeks, and 2 months of concussive injury.

Abstract: Participants were right-handed male varsity contact-sport athletes (20.2±1.0 years of age) with a medically diagnosed SRC (no loss of consciousness).

Abstract: They were compared to right-handed male varsity non-contact-sport athletes serving as controls (19.9±1.7 years).

Abstract: We found significantly increased radial diffusivity (RD) in concussed athletes (n=12; paired t-test, tract-based spatial statistics; p<0.025) at 2 days, when compared to the 2-week postinjury time point.

Abstract: The increase was found in a cluster of right hemisphere voxels, spanning the posterior limb of the internal capsule (IC), the retrolenticular part of the IC, the inferior longitudinal fasciculus, the inferior fronto-occipital fasciculus (sagittal stratum), and the anterior thalamic radiation.

Abstract: Post-hoc, univariate, between-group (controls vs. concussed), mixed-effects analysis of the cluster showed significantly higher RD at 2 days (p=0.002), as compared to the controls, with a trend in the same direction at 2 months (p=0.11).

Abstract: Results for fractional anisotropy (FA) in the same cluster showed a similar, but inverted, pattern; FA was decreased at 2 days and at 2 months postinjury, when compared to healthy controls.

Abstract: At 2 weeks postinjury, no statistical differences between concussed and control athletes were found with regard to either RD or FA.

Abstract: These results support the hypothesis of increased RD and reduced FA within 72 h postinjury, followed by recovery that may extend beyond 2 weeks.

Abstract: RD appears to be a sensitive measure of concussive injury.


HIV–1 Infects Multipotent Progenitor Cells Causing Cell Death and Establishing Latent Cellular Reservoirs

Abstract: HIV causes a chronic infection characterized by depletion of CD4(+) T lymphocytes and the development of opportunistic infections.

Abstract: Despite drugs that inhibit viral spread, HIV infection has been difficult to cure because of uncharacterized reservoirs of infected cells that are resistant to highly active antiretroviral therapy (HAART) and the immune response.

Abstract: Here we used CD34(+) cells from infected people as well as in vitro studies of wild-type HIV to show infection and killing of CD34(+) multipotent hematopoietic progenitor cells (HPCs).

Abstract: In some HPCs, we detected latent infection that stably persisted in cell culture until viral gene expression was activated by differentiation factors.

Abstract: A unique reporter HIV that directly detects latently infected cells in vitro confirmed the presence of distinct populations of active and latently infected HPCs.

Abstract: These findings have major implications for understanding HIV bone marrow pathology and the mechanisms by which HIV causes persistent infection.


The human long non-coding RNA-RoR is a p53 repressor in response to DNA damage

Abstract: It is well known that upon stress, the level of the tumor suppressor p53 is remarkably elevated.

Abstract: However, despite extensive studies, the underlying mechanism involving important inter-players for stress-induced p53 regulation is still not fully understood.

Abstract: We present evidence that the human lincRNA-RoR (RoR) is a strong negative regulator of p53.

Abstract: Unlike MDM2 that causes p53 degradation through the ubiquitin-proteasome pathway, RoR suppresses p53 translation through direct interaction with the heterogeneous nuclear ribonucleoprotein I (hnRNP I).

Abstract: Importantly, a 28-base RoR sequence carrying hnRNP I binding motifs is essential and sufficient for p53 repression.

Abstract: We further show that RoR inhibits p53-mediated cell cycle arrest and apoptosis.

Abstract: Finally, we demonstrate a RoR-p53 autoregulatory feedback loop where p53 transcriptionally induces RoR expression.

Abstract: Together, these results suggest that the RoR-hnRNP I-p53 axis may constitute an additional surveillance network for the cell to better respond to various stresses.


Experimental and clinical studies on lactate and pyruvate as indicators of the severity of acute circulatory failure (shock).

Abstract: The increase in lactate (L) and pyruvate (P) content of arterial blood during experimental and clinical shock states and the extent to which such increases serve as measures of oxygen deficit and irreversible injury were investigated on an empirical basis.

Abstract: A standardized method for production of hemorrhagic shock in the Wistar rat was employed.

Abstract: During a 4-hour bleeding period, oxygen consumption of the rat was reduced to approximately 40% of control value, pH was reduced from 7.39 to 7.08, and a concurrent increase in L from 0.80 to 6.06 mm and in P from 0.07 to 0.18 mm were observed.

Abstract: Cumulative oxygen debt correlated with log L (r = 0.50; P < 0.0005) and both were significantly related to survival.

Abstract: Correlation of cumulative oxygen debt and survival, both with P and with computed values of the lactate pyruvate ratio (L/P) and excess lactate (XL), were of no higher magnitude.

Abstract: Partial correlation analysis demonstrated that neither the measurement of P nor the computation of L/P or XL improved predictability...


Virtual microdissection identifies distinct tumor- and stroma-specific subtypes of pancreatic ductal adenocarcinoma

Abstract: Pancreatic ductal adenocarcinoma (PDAC) remains a lethal disease with a 5-year survival rate of 4%.

Abstract: A key hallmark of PDAC is extensive stromal involvement, which makes capturing precise tumor-specific molecular information difficult.

Abstract: Here we have overcome this problem by applying blind source separation to a diverse collection of PDAC gene expression microarray data, including data from primary tumor, metastatic and normal samples.

Abstract: By digitally separating tumor, stromal and normal gene expression, we have identified and validated two tumor subtypes, including a 'basal-like' subtype that has worse outcome and is molecularly similar to basal tumors in bladder and breast cancers.

Abstract: Furthermore, we define 'normal' and 'activated' stromal subtypes, which are independently prognostic.

Abstract: Our results provide new insights into the molecular composition of PDAC, which may be used to tailor therapies or provide decision support in a clinical setting where the choice and timing of therapies are critical.


Inducible nitric oxide synthase in pulmonary alveolar macrophages from patients with tuberculosis

Abstract: The high-output pathway of nitric oxide production helps protect mice from infection by several pathogens, including Mycobacterium tuberculosis.

Abstract: However, based on studies of cells cultured from blood, it is controversial whether human mononuclear phagocytes can express the corresponding inducible nitric oxide synthase (iNOS;NOS2).

Abstract: The present study examined alveolar macrophages fixed directly after bronchopulmonary lavage.

Abstract: An average of 65% of the macrophages from 11 of 11 patients with untreated, culture-positive pulmonary tuberculosis reacted with an antibody documented herein to be monospecific for human NOS2.

Abstract: In contrast, a mean of 10% of bronchoalveolar lavage cells were positive from each of five clinically normal subjects.

Abstract: Tuberculosis patients' macrophages displayed diaphorase activity in the same proportion that they stained for NOS2, under assay conditions wherein the diaphorase reaction was strictly dependent on NOS2 expression.

Abstract: Bronchoalveolar lavage specimens also contained NOS2 mRNA.

Abstract: Thus, macrophages in the lungs of people with clinically active Mycobacterium tuberculosis infection often express catalytically competent NOS2.


The use of mouse models to understand and improve cognitive deficits in Down syndrome

Abstract: Remarkable advances have been made in recent years towards therapeutics for cognitive impairment in individuals with Down syndrome (DS) by using mouse models.

Abstract: In this review, we briefly describe the phenotypes of mouse models that represent outcome targets for drug testing, the behavioral tests used to assess impairments in cognition and the known mechanisms of action of several drugs that are being used in preclinical studies or are likely to be tested in clinical trials.

Abstract: Overlaps in the distribution of targets and in the pathways that are affected by these diverse drugs in the trisomic brain suggest new avenues for DS research and drug development.


position-specific gap penalties

Abstract: The sensitivity of the commonly used progressive multiple sequence alignment method has been greatly improved for the alignment of divergent protein sequences.

Abstract: Firstly, individual weights are assigned to each sequence in a partial alignment in order to down-weight near-duplicate sequences and up-weight the most divergent ones.

Abstract: Secondly, amino acid substitution matrices are varied at different alignment stages according to the divergence of the sequences to be aligned.

Abstract: Thirdly, residue-specific gap penalties and locally reduced gap penalties in hydrophilic regions encourage new gaps in potential loop regions rather than regular secondary structure.

Abstract: Fourthly, positions in early alignments where gaps have been opened receive locally reduced gap penalties to encourage the opening up of new gaps at these positions.

Abstract: These modifications are incorporated into a new program, CLUSTAL W which is freely available.


Pedestrian Detection via Periodic Motion Analysis

Abstract: We describe algorithms for detecting pedestrians in videos acquired by infrared (and color) sensors.

Abstract: Two approaches are proposed based on gait.

Abstract: The first employs computationally efficient periodicity measurements.

Abstract: Unlike other methods, it estimates a periodic motion frequency using two cascading hypothesis testing steps to filter out non-cyclic pixels so that it works well for both radial and lateral walking directions.

Abstract: The extraction of the period is efficient and robust with respect to sensor noise and cluttered background.

Abstract: In order to integrate shape and motion, we convert the cyclic pattern into a binary sequence by Maximal Principal Gait Angle (MPGA) fitting in the second method.

Abstract: It does not require alignment and continuously estimates the period using a Phase-locked Loop.

Abstract: Both methods are evaluated by experimental results that measure performance as a function of size, movement direction, frame rate and sequence length.


Seroepidemiological survey of feline retrovirus infections in cats in Taiwan in 1993 and 1994.

Abstract: In order to investigate the prevalence of infections with three feline retroviruses feline immunodeficiency virus (FIV), feline leukemia virus (FeLV) and feline syncytial virus (FSV) in Taiwan, we collected a total of 75 blood samples from cats from veterinary hospitals, a breeding cattery and a homeless shelter in 1993 and 1994.

Abstract: We examined the presences of anti-FIV and FSV antibodies and FeLV-p27 antigen in these samples by the indirect immunofluorescence and/or enzyme-linked immunosorbent assays.

Abstract: All of the serum samples positive for FIV were obtained from homeless cats and the overall FIV positive rate was 4%.

Abstract: The overall positive rates of FSV and FeLV were 28% and 1.3%, respectively.

Abstract: From these results, together with previous seroepidemiological surveys by others, it was revealed that the prevalence of FIV and FeLV infections appeared to be lower in Taiwan than in the United States or Japan.

Abstract: In contrast, the prevalence of FSV infection in Taiwan was as high as that in Japan.


Notch targets and their regulation.

Abstract: The proteolytic cleavages elicited by activation of the Notch receptor release an intracellular fragment, Notch intracellular domain, which enters the nucleus to activate the transcription of targets.

Abstract: Changes in transcription are therefore a major output of this pathway.

Abstract: However, the Notch outputs clearly differ from cell type to cell type.

Abstract: In this review we discuss current understanding of Notch targets, the mechanisms involved in their transcriptional regulation, and what might underlie the activation of different sets of targets in different cell types.


Extraction and Analysis of Multiple Periodic Motions in Video Sequences

Abstract: The analysis of periodic or repetitive motions is useful in many applications, such as the recognition and classification of human and animal activities.

Abstract: Existing methods for the analysis of periodic motions first extract motion trajectories using spatial information and then determine if they are periodic.

Abstract: These approaches are mostly based on feature matching or spatial correlation, which are often infeasible, unreliable, or computationally demanding.

Abstract: In this paper, we present a new approach, based on the time- frequency analysis of the video sequence as a whole.

Abstract: Multiple periodic trajectories are extracted and their periods are estimated simultaneously.

Abstract: The objects that are moving in a periodic manner are extracted using the spatial domain information.

Abstract: Experiments with synthetic and real sequences display the capabilities of this approach.


MicroRNA-21 is up-regulated in allergic airway inflammation and regulates IL-12p35 expression.

Abstract: Allergic airway inflammation is characterized by marked in situ changes in gene and protein expression, yet the role of microRNAs (miRNAs), a new family of key mRNA regulatory molecules, in this process has not yet been reported.

Abstract: Using a highly sensitive microarray-based approach, we identified 21 miRNAs with differential expression between doxycycline-induced lung-specific IL-13 transgenic mice (with allergic airway inflammation) and control mice.

Abstract: In particular, we observed overexpression of miR-21 and underexpression of miR-1 in the induced IL-13 transgenic mice compared with control mice.

Abstract: These findings were validated in two independent models of allergen-induced allergic airway inflammation and in IL-4 lung transgenic mice.

Abstract: Although IL-13-induced miR-21 expression was IL-13Ralpha1 dependent, allergen-induced miR-21 expression was mediated mainly independent of IL-13Ralpha1 and STAT6.

Abstract: Notably, predictive algorithms identified potential direct miR-21 targets among IL-13-regulated lung transcripts, such as IL-12p35 mRNA, which was decreased in IL-13 transgenic mice.

Abstract: Introduction of pre-miR-21 dose dependently inhibited cellular expression of a reporter vector harboring the 3'-untranslated region of IL-12p35.

Abstract: Moreover, mutating miR-21 binding sites in IL-12p35 3'-untranslated region abrogated miR-21-mediated repression.

Abstract: In summary, we have identified a miRNA signature in allergic airway inflammation, which includes miR-21 that modulates IL-12, a molecule germane to Th cell polarization.


COPD: epidemiology, prevalence, morbidity and mortality, and disease heterogeneity.

Abstract: COPD continues to cause a heavy health and economic burden both in the United States and around the world.

Abstract: Some of the risk factors for COPD are well-known and include smoking, occupational exposures, air pollution, airway hyperresponsiveness, asthma, and certain genetic variations, although many questions, such as why < 20% of smokers develop significant airway obstruction, remain.

Abstract: Precise definitions of COPD vary and are frequently dependent on an accurate diagnosis of the problem by a physician.

Abstract: These differences in the definition of COPD can have large effects on the estimates of COPD in the population.

Abstract: Furthermore, evidence that COPD represents several different disease processes with potentially different interventions continues to emerge.

Abstract: In most of the world, COPD prevalence and mortality are still increasing and likely will continue to rise in response to increases in smoking, particularly by women and adolescents.

Abstract: Resources aimed at smoking cessation and prevention, COPD education and early detection, and better treatment will be of the most benefit in our continuing efforts against this important cause of morbidity and mortality.


Changing geographic ranges of ticks and tick-borne pathogens: drivers, mechanisms and consequences for pathogen diversity

Abstract: The geographic ranges of ticks and tick-borne pathogens are changing due to global and local environmental (including climatic) changes.

Abstract: In this review we explore current knowledge of the drivers for changes in the ranges of ticks and tick-borne pathogen species and strains via effects on their basic reproduction number (R 0), and the mechanisms of dispersal that allow ticks and tick-borne pathogens to invade suitable environments.

Abstract: Using the expanding geographic distribution of the vectors and agent of Lyme disease as an example we then investigate what could be expected of the diversity of tick-borne pathogens during the process of range expansion, and compare this with what is currently being observed.

Abstract: Lastly we explore how historic population and range expansions and contractions could be reflected in the phylogeography of ticks and tick-borne pathogens seen in recent years, and conclude that combined study of currently changing tick and tick-borne pathogen ranges and diversity, with phylogeographic analysis, may help us better predict future patterns of invasion and diversity.


Mutant KRAS is a druggable target for pancreatic cancer.

Abstract: Pancreatic ductal adenocarcinoma (PDA) represents an unmet therapeutic challenge.

Abstract: PDA is addicted to the activity of the mutated KRAS oncogene which is considered so far an undruggable therapeutic target.

Abstract: We propose an approach to target KRAS effectively in patients using RNA interference.

Abstract: To meet this challenge, we have developed a local prolonged siRNA delivery system (Local Drug EluteR, LODER) shedding siRNA against the mutated KRAS (siG12D LODER).

Abstract: The siG12D LODER was assessed for its structural, release, and delivery properties in vitro and in vivo.

Abstract: The effect of the siG12D LODER on tumor growth was assessed in s.c.

Abstract: and orthotopic mouse models.

Abstract: KRAS silencing effect was further assessed on the KRAS downstream signaling pathway.

Abstract: The LODER-encapsulated siRNA was stable and active in vivo for 155 d. Treatment of PDA cells with siG12D LODER resulted in a significant decrease in KRAS levels, leading to inhibition of proliferation and epithelial-mesenchymal transition.

Abstract: In vivo, siG12D LODER impeded the growth of human pancreatic tumor cells and prolonged mouse survival.

Abstract: We report a reproducible and safe delivery platform based on a miniature biodegradable polymeric matrix, for the controlled and prolonged delivery of siRNA.

Abstract: This technology provides the following advantages: (i) siRNA is protected from degradation; (ii) the siRNA is slowly released locally within the tumor for prolonged periods; and (iii) the siG12D LODER elicits a therapeutic effect, thereby demonstrating that mutated KRAS is indeed a druggable target.


Trimmomatic: a flexible trimmer for Illumina sequence data

Abstract: MOTIVATION Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance.

Abstract: We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data.

Abstract: RESULTS The value of NGS read preprocessing is demonstrated for both reference-based and reference-free tasks.

Abstract: Trimmomatic is shown to produce output that is at least competitive with, and in many cases superior to, that produced by other tools, in all scenarios tested.

Abstract: AVAILABILITY AND IMPLEMENTATION Trimmomatic is licensed under GPL V3.

Abstract: It is cross-platform (Java 1.5+ required) and available at http://www.usadellab.org/cms/index.php?page=trimmomatic   CONTACT usadel@bio1.rwth-aachen.de   SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.


Basics of PD-1 in self-tolerance, infection, and cancer immunity

Abstract: Successful cancer treatment requires understanding host immune response against tumor cells.

Abstract: PD-1 belongs to the CD28 superfamily of receptors that work as “checkpoints” of immune activation.

Abstract: PD-1 maintains immune self-tolerance to prevent autoimmunity and controls T-cell reaction during infection to prevent excessive tissue damage.

Abstract: Tumor cells that arise from normal tissue acquire mutations that can be targeted by lymphocytes.

Abstract: Accumulating lines of evidence suggest that tumor cells evade host immune attack by expressing physiological PD-1 ligands and stimulating PD-1 on the lymphocytes.

Abstract: Based on this idea, researchers have successfully demonstrated that systemic administration of monoclonal antibodies that inhibit the binding of PD-1 to the ligands reactivated T cells and augmented the anti-cancer immune response.

Abstract: In this review, I summarize the basics of T-cell biology and its regulation by PD-1 and discuss the current understanding and questions about this multifaceted molecule.


Dissociation of β1- and β2-adrenergic receptor subtypes in the retrieval of cocaine-associated memory.

Abstract: Drug seeking is maintained by encounters with drug-associated cues, and disrupting retrieval of these drug-cue associations would reduce the risk of relapse.

Abstract: Retrieval of cocaine-associated memories is dependent on β-adrenergic receptor (β-AR) activation, and blockade of these receptors induces a persistent retrieval deficit.

Abstract: Whether retrieval of cocaine-associated memory is mediated by a specific β-AR subtype, however, remains unclear.

Abstract: Using a cocaine conditioned place preference (CPP) procedure, we examined whether retrieval of a cocaine CPP memory is mediated collectively by β1- and β2-ARs, or by one of these β-AR subtypes alone.

Abstract: We show that co-blockade of β1- and β2-ARs abolished CPP expression on that and subsequent drug-free CPP tests, resulting in a long-lasting retrieval deficit that prevented subsequent cocaine-induced reinstatement.

Abstract: To dissociate the necessity of either β1- or β2-ARs alone, we administered subtype-specific antagonists prior to retrieval.

Abstract: Administration of a β1-AR antagonist before the initial CPP trial dose-dependently reduced expression of a CPP on that and subsequent drug-free trials as compared to vehicle administration.

Abstract: In contrast, administration of a β2-AR antagonist had no effect on initial CPP expression, although the highest dose reduced subsequent CPP expression.

Abstract: Importantly, either β1- or β2-AR blockade prior to an initial retrieval trial prevented subsequent cocaine-induced reinstatement.

Abstract: Our findings indicate that the β1-AR subtype mediates retrieval of a cocaine CPP, and that acutely blocking either β1- or β2-ARs can prevent subsequent cocaine-induced reinstatement.

Abstract: Thus, β-AR antagonists, particularly β1-ARs antagonists, could serve as adjuncts for addiction therapies to prevent retrieval of drug-associated memories and provide protection against relapse.


Podoplanin-Rich Stromal Networks Induce Dendritic Cell Motility via Activation of the C-type Lectin Receptor CLEC-2

Abstract: To initiate adaptive immunity, dendritic cells (DCs) move from parenchymal tissues to lymphoid organs by migrating along stromal scaffolds that display the glycoprotein podoplanin (PDPN).

Abstract: PDPN is expressed by lymphatic endothelial and fibroblastic reticular cells and promotes blood-lymph separation during development by activating the C-type lectin receptor, CLEC-2, on platelets.

Abstract: Here, we describe a role for CLEC-2 in the morphodynamic behavior and motility of DCs.

Abstract: CLEC-2 deficiency in DCs impaired their entry into lymphatics and trafficking to and within lymph nodes, thereby reducing T cell priming.

Abstract: CLEC-2 engagement of PDPN was necessary for DCs to spread and migrate along stromal surfaces and sufficient to induce membrane protrusions.

Abstract: CLEC-2 activation triggered cell spreading via downregulation of RhoA activity and myosin light-chain phosphorylation and triggered F-actin-rich protrusions via Vav signaling and Rac1 activation.

Abstract: Thus, activation of CLEC-2 by PDPN rearranges the actin cytoskeleton in DCs to promote efficient motility along stromal surfaces.


The Public Health Responsibility Deal: brokering a deal for public health, but on whose terms?

Abstract: UNLABELLED Coalitions of multinational food and drink businesses have pledged to reformulate their products and to market them responsibly.

Abstract: Largely business-led and self-regulated, the integrity of these voluntary initiatives has been questioned.

Abstract: The Public Health Responsibility Deal in England is an example of a voluntary initiative that is government-led.

Abstract: Does this approach provide evidence that with public leadership there is potential for voluntary actions to deliver meaningful results for public health?

Abstract: METHODS The subject of the research is the calorie reduction initiative of the Responsibility Deal.

Abstract: Source material was obtained primarily through a series of UK Freedom of Information requests and comprises previously unpublished Department of Health documentation relating to relevant meetings held during 2011 and 2012.

Abstract: RESULTS The Responsibility Deal approach to calorie reduction deliberately involves the food industry in the specification of the measures it is to implement (reformulation and portion control).

Abstract: Finding the common ground between private and public interests has resulted in the deflection of public health objectives and the preclusion of adequate monitoring and evaluation.

Abstract: CONCLUSIONS The Responsibility Deal approach is fundamentally flawed in its expectation that industry will take voluntary actions that prioritise public health interests above its own.

Abstract: Being government-led counts for little in the absence of sanctions to drive compliance.

Abstract: Instead the initiative affords private interests the opportunity to influence in their favour the public health policies and strategies that affect their products.


Role of endothelial shear stress in the natural history of coronary atherosclerosis and vascular remodeling: molecular, cellular, and vascular behavior.

Abstract: Although the entire coronary tree is exposed to the atherogenic effect of the systemic risk factors, atherosclerotic lesions form at specific arterial regions, where low and oscillatory endothelial shear stress (ESS) occur.

Abstract: Low ESS modulates endothelial gene expression through complex mechanoreception and mechanotransduction processes, inducing an atherogenic endothelial phenotype and formation of an early atherosclerotic plaque.

Abstract: Each early plaque exhibits an individual natural history of progression, regression, or stabilization, which is dependent not only on the formation and progression of atherosclerosis but also on the vascular remodeling response.

Abstract: Although the pathophysiologic mechanisms involved in the remodeling of the atherosclerotic wall are incompletely understood, the dynamic interplay between local hemodynamic milieu, low ESS in particular, and the biology of the wall is likely to be important.

Abstract: In this review, we explore the molecular, cellular, and vascular processes supporting the role of low ESS in the natural history of coronary atherosclerosis and vascular remodeling and indicate likely mechanisms concerning the different natural history trajectories of individual coronary lesions.

Abstract: Atherosclerotic plaques associated with excessive expansive remodeling evolve to high-risk plaques, because low ESS conditions persist, thereby promoting continued local lipid accumulation, inflammation, oxidative stress, matrix breakdown, and eventually further plaque progression and excessive expansive remodeling.

Abstract: An enhanced understanding of the pathobiologic processes responsible for atherosclerosis and vascular remodeling might allow for early identification of a high-risk coronary plaque and thereby provide a rationale for innovative diagnostic and/or therapeutic strategies for the management of coronary patients and prevention of acute coronary syndromes.


Schistosoma mansoni worms induce anergy of T cells via selective up-regulation of programmed death ligand 1 on macrophages.

Abstract: Infectious pathogens can selectively stimulate activation or suppression of T cells to facilitate their survival within humans.

Abstract: In this study we demonstrate that the trematode parasite Schistosoma mansoni has evolved with two distinct mechanisms to suppress T cell activation.

Abstract: During the initial 4- to 12-wk acute stages of a worm infection both CD4(+) and CD8(+) T cells are anergized.

Abstract: In contrast, infection with male and female worms induced T cell anergy at 4 wk, which was replaced after egg laying by T cell suppression via a known NO-dependent mechanism, that was detected for up to 40 wk after infection.

Abstract: Worm-induced anergy was mediated by splenic F4/80(+) macrophages (Mphi) via an IL-4-, IL-13-, IL-10-, TGF-beta-, and NO-independent, but cell contact-dependent, mechanism.

Abstract: F4/80(+) Mphi isolated from worm-infected mice were shown to induce anergy of naive T cells in vitro.

Abstract: Furthermore, naive Mphi exposed to live worms in vitro also induced anergy in naive T cells.

Abstract: Flow cytometry on in vivo and in vitro worm-modulated Mphi revealed that of the family of B7 costimulatory molecules, only programmed death ligand 1 (PD-L1) was selectively up-regulated.

Abstract: The addition of inhibitory mAb against PD-L1, but not PD-L2, to worm-modulated Mphi completely blocked the ability of these cells to anergize T cells.

Abstract: These data highlight a novel mechanism through which S. mansoni worms have usurped the natural function of PD-L1 to reduce T cell activation during early acute stages of infection before the subsequent emergence of egg-induced T cell suppression in the chronic stages of infection.


Thawing Frozen Robust Multi-array Analysis (fRMA)

Abstract: BACKGROUND A novel method of microarray preprocessing--Frozen Robust Multi-array Analysis (fRMA)--has recently been developed.

Abstract: This algorithm allows the user to preprocess arrays individually while retaining the advantages of multi-array preprocessing methods.

Abstract: The frozen parameter estimates required by this algorithm are generated using a large database of publicly available arrays.

Abstract: Curation of such a database and creation of the frozen parameter estimates is time-consuming; therefore, fRMA has only been implemented on the most widely used Affymetrix platforms.

Abstract: RESULTS We present an R package, frmaTools, that allows the user to quickly create his or her own frozen parameter vectors.

Abstract: We describe how this package fits into a preprocessing workflow and explore the size of the training dataset needed to generate reliable frozen parameter estimates.

Abstract: This is followed by a discussion of specific situations in which one might wish to create one's own fRMA implementation.

Abstract: For a few specific scenarios, we demonstrate that fRMA performs well even when a large database of arrays in unavailable.

Abstract: CONCLUSIONS By allowing the user to easily create his or her own fRMA implementation, the frmaTools package greatly increases the applicability of the fRMA algorithm.

Abstract: The frmaTools package is freely available as part of the Bioconductor project.


Transcriptional repressor Blimp-1 is essential for T cell homeostasis and self-tolerance

Abstract: T cell homeostasis is crucial for a functional immune system, as the accumulation of T cells resulting from lack of regulatory T cells or an inability to shut down immune responses can lead to inflammation and autoimmune pathology.

Abstract: Here we show that Blimp-1, a transcriptional repressor that is a 'master regulator' of terminal B cell differentiation, was expressed in a subset of antigen-experienced CD4+ and CD8+ T cells.

Abstract: Mice reconstituted with fetal liver stem cells expressing a mutant Blimp-1 lacking the DNA-binding domain developed a lethal multiorgan inflammatory disease caused by an accumulation of effector and memory T cells.

Abstract: These data identify Blimp-1 as an essential regulator of T cell homeostasis and suggest that Blimp-1 regulates both B cell and T cell differentiation.


Nuclear repositioning of the VSG promoter during developmental silencing in Trypanosoma brucei

Abstract: Interphase nuclear repositioning of chromosomes has been implicated in the epigenetic regulation of RNA polymerase (pol) II transcription.

Abstract: However, little is known about the nuclear position–dependent regulation of RNA pol I–transcribed loci.

Abstract: Trypanosoma brucei is an excellent model system to address this question because its two main surface protein genes, procyclin and variant surface glycoprotein (VSG), are transcribed by pol I and undergo distinct transcriptional activation or downregulation events during developmental differentiation.

Abstract: Although the monoallelically expressed VSG locus is exclusively localized to an extranucleolar body in the bloodstream form, in this study, we report that nonmutually exclusive procyclin genes are located at the nucleolar periphery.

Abstract: Interestingly, ribosomal DNA loci and pol I transcription activity are restricted to similar perinucleolar positions.

Abstract: Upon developmental transcriptional downregulation, however, the active VSG promoter selectively undergoes a rapid and dramatic repositioning to the nuclear envelope.

Abstract: Subsequently, the VSG promoter region was subjected to chromatin condensation.

Abstract: We propose a model whereby the VSG expression site pol I promoter is selectively targeted by temporal nuclear repositioning during developmental silencing.


An administrative claims measure suitable for profiling hospital performance on the basis of 30-day all-cause readmission rates among patients with heart failure.

Abstract: BACKGROUND Readmission soon after hospital discharge is an expensive and often preventable event for patients with heart failure.

Abstract: We present a model approved by the National Quality Forum for the purpose of public reporting of hospital-level readmission rates by the Centers for Medicare & Medicaid Services.

Abstract: METHODS AND RESULTS We developed a hierarchical logistic regression model to calculate hospital risk-standardized 30-day all-cause readmission rates for patients hospitalized with heart failure.

Abstract: The model was derived with the use of Medicare claims data for a 2004 cohort and validated with the use of claims and medical record data.

Abstract: The unadjusted readmission rate was 23.6%.

Abstract: The final model included 37 variables, had discrimination ranging from 15% observed 30-day readmission rate in the lowest predictive decile to 37% in the upper decile, and had a c statistic of 0.60.

Abstract: The 25th and 75th percentiles of the risk-standardized readmission rates across 4669 hospitals were 23.1% and 24.0%, with 5th and 95th percentiles of 22.2% and 25.1%, respectively.

Abstract: The odds of all-cause readmission for a hospital 1 standard deviation above average was 1.30 times that of a hospital 1 standard deviation below average.

Abstract: State-level adjusted readmission rates developed with the use of the claims model are similar to rates produced for the same cohort with the use of a medical record model (correlation, 0.97; median difference, 0.06 percentage points).

Abstract: CONCLUSIONS This claims-based model of hospital risk-standardized readmission rates for heart failure patients produces estimates that may serve as surrogates for those derived from a medical record model.


Queueing up for enzymatic processing: correlated signaling through coupled degradation

Abstract: High-throughput technologies have led to the generation of complex wiring diagrams as a post-sequencing paradigm for depicting the interactions between vast and diverse cellular species.

Abstract: While these diagrams are useful for analyzing biological systems on a large scale, a detailed understanding of the molecular mechanisms that underlie the observed network connections is critical for the further development of systems and synthetic biology.

Abstract: Here, we use queueing theory to investigate how 'waiting lines' can lead to correlations between protein 'customers' that are coupled solely through a downstream set of enzymatic 'servers'.

Abstract: Using the E. coli ClpXP degradation machine as a model processing system, we observe significant cross-talk between two networks that are indirectly coupled through a common set of processors.

Abstract: We further illustrate the implications of enzymatic queueing using a synthetic biology application, in which two independent synthetic networks demonstrate synchronized behavior when common ClpXP machinery is overburdened.

Abstract: Our results demonstrate that such post-translational processes can lead to dynamic connections in cellular networks and may provide a mechanistic understanding of existing but currently inexplicable links.


The histone demethylases Jhdm1a/1b enhance somatic cell reprogramming in a vitamin-C-dependent manner.

Abstract: Reprogramming of somatic cells into induced pluripotent stem cells (iPSCs) resets the epigenome to an embryonic-like state.

Abstract: Vitamin C enhances the reprogramming process, but the underlying mechanisms are unclear.

Abstract: Here we show that the histone demethylases Jhdm1a/1b are key effectors of somatic cell reprogramming downstream of vitamin C. We first observed that vitamin C induces H3K36me2/3 demethylation in mouse embryonic fibroblasts in culture and during reprogramming.

Abstract: We then identified Jhdm1a/1b, two known vitamin-C-dependent H3K36 demethylases, as potent regulators of reprogramming through gain- and loss-of-function approaches.

Abstract: Furthermore, we found that Jhdm1b accelerates cell cycle progression and suppresses cell senescence during reprogramming by repressing the Ink4/Arf locus.

Abstract: Jhdm1b also cooperates with Oct4 to activate the microRNA cluster 302/367, an integral component of the pluripotency machinery.

Abstract: Our results therefore reveal a role for H3K36me2/3 in cell fate determination and establish a link between histone demethylases and vitamin-C-induced reprogramming.


Preexisting helminth infection induces inhibition of innate pulmonary anti-tuberculosis defense by engaging the IL-4 receptor pathway

Abstract: Tuberculosis and helminthic infections coexist in many parts of the world, yet the impact of helminth-elicited Th2 responses on the ability of the host to control Mycobacterium tuberculosis (Mtb) infection has not been fully explored.

Abstract: We show that mice infected with the intestinal helminth Nippostrongylus brasiliensis (Nb) exhibit a transitory impairment of resistance to airborne Mtb infection.

Abstract: Furthermore, a second dose of Nb infection substantially increases the bacterial burden in the lungs of co-infected mice.

Abstract: Interestingly, the Th2 response in the co-infected animals did not impair the onset and development of the protective Mtb-specific Th1 cellular immune responses.

Abstract: However, the helminth-induced Th2 environment resulted in the accumulation of alternatively activated macrophages (AAMs) in the lung.

Abstract: Co-infected mice lacking interleukin (IL) 4Rα exhibited improved ability to control Mtb infection, which was accompanied by significantly reduced accumulation of AAMs.

Abstract: Moreover, IL-4Rα(-/-) mice adoptively transferred with wild-type macrophages had a significantly higher Mtb load in their lungs compared with those that received IL-4Rα(-/-) macrophages, suggesting a direct contribution for the IL-4R pathway to the heightened susceptibility of co-infected animals.

Abstract: The Th2 response can thus enhance the intracellular persistence of Mtb, in part by mediating the alternative activation of macrophages via the IL-4Rα signaling pathway.


Archaea in biogeochemical cycles.

Abstract: Archaea constitute a considerable fraction of the microbial biomass on Earth.

Abstract: Like Bacteria they have evolved a variety of energy metabolisms using organic and/or inorganic electron donors and acceptors, and many of them are able to fix carbon from inorganic sources.

Abstract: Archaea thus play crucial roles in the Earth's global geochemical cycles and influence greenhouse gas emissions.

Abstract: Methanogenesis and anaerobic methane oxidation are important steps in the carbon cycle; both are performed exclusively by anaerobic archaea.

Abstract: Oxidation of ammonia to nitrite is performed by Thaumarchaeota.

Abstract: They represent the only archaeal group that resides in large numbers in the global aerobic terrestrial and marine environments on Earth.

Abstract: Sulfur-dependent archaea are confined mostly to hot environments, but metal leaching by acidophiles and reduction of sulfate by anaerobic, nonthermophilic methane oxidizers have a potential impact on the environment.

Abstract: The metabolisms of a large number of archaea, in particular those dominating the subsurface, remain to be explored.


Novel proteinaceous infectious particles cause scrapie.

Abstract: After infection and a prolonged incubation period, the scrapie agent causes a degenerative disease of the central nervous system in sheep and goats.

Abstract: Six lines of evidence including sensitivity to proteases demonstrate that this agent contains a protein that is required for infectivity.

Abstract: Although the scrapie agent is irreversibly inactivated by alkali, five procedures with more specificity for modifying nucleic acids failed to cause inactivation.

Abstract: The agent shows heterogeneity with respect to size, apparently a result of its hydrophobicity; the smallest form may have a molecular weight of 50,000 or less.

Abstract: Because the novel properties of the scrapie agent distinguish it from viruses, plasmids, and viroids, a new term "prion" is proposed to denote a small proteinaceous infectious particle which is resistant to inactivation by most procedures that modify nucleic acids.

Abstract: Knowledge of the scrapie agent structure may have significance for understanding the causes of several degenerative diseases.


Viral Carcinogenesis.

Abstract: Cancer has been recognized for thousands of years.

Abstract: Egyptians believed that cancer occurred at the will of the gods.

Abstract: Hippocrates believed human disease resulted from an imbalance of the four humors: blood, phlegm, yellow bile, and black bile with cancer being caused by excess black bile.

Abstract: The lymph theory of cancer replaced the humoral theory and the blastema theory replaced the lymph theory.

Abstract: Rudolph Virchow was the first to recognize that cancer cells like all cells came from other cells and believed chronic irritation caused cancer.

Abstract: At the same time there was a belief that trauma caused cancer, though it never evolved after many experiments inducing trauma.

Abstract: The birth of virology occurred in 1892 when Dimitri Ivanofsky demonstrated that diseased tobacco plants remained infective after filtering their sap through a filter that trapped bacteria.

Abstract: Martinus Beijerinck would call the tiny infective agent a virus and both Dimitri Ivanofsky and Marinus Beijerinck would become the fathers of virology.

Abstract: Not to long thereafter, Payton Rous founded the field of tumor virology in 1911 with his discovery of a transmittable sarcoma of chickens by what would come to be called Rous sarcoma virus or RSV for short.

Abstract: The first identified human tumor virus was the Epstein-Barr virus (EBV), named after Tony Epstein and Yvonne Barr who visualized the virus particles in Burkitt's lymphoma cells by electron microscopy in 1965.

Abstract: Since that time, many viruses have been associated with carcinogenesis including the most studied, human papilloma virus associated with cervical carcinoma, many other anogenital carcinomas, and oropharyngeal carcinoma.

Abstract: The World Health Organization currently estimates that approximately 22% of worldwide cancers are attributable to infectious etiologies, of which viral etiologies is estimated at 15-20%.

Abstract: The field of tumor virology/viral carcinogenesis has not only identified viruses as etiologic agents of human cancers, but has also given molecular insights to all human cancers including the oncogene activation and tumor suppressor gene inactivation.


Monitoring spatiotemporal biogenesis of macromolecular assemblies by pulse-chase epitope labeling.

Abstract: Many cellular proteins perform their roles within macromolecular assemblies.

Abstract: Hence, an understanding of how these multiprotein complexes form is a fundamental question in cell biology.

Abstract: We developed a translation-controlled pulse-chase system that allows time-resolved isolation of newly forming multiprotein complexes in chemical quantities suitable for biochemical and cell biological analysis.

Abstract: The "pulse" is triggered by an unnatural amino acid, which induces immediate translation of an amber stop codon repressed mRNA encoding the protein of interest with a built-in tag for detection and purification.

Abstract: The "chase" is elicited by stopping translation of this bait via a riboswitch in the respective mRNA.

Abstract: Over the course of validating our method, we discovered a distinct time-resolved assembly step during NPC biogenesis and could directly monitor the spatiotemporal maturation of preribosomes via immunofluorescence detection and purification of a pulse-labeled ribosomal protein.

Abstract: Thus, we provide an innovative strategy to study dynamic protein assembly within cellular networks.


Statins in the primary prevention of cardiovascular disease

Abstract: Statins are widely used in the evidence-based lowering of cardiovascular disease (CVD) risk.

Abstract: The use of these drugs for secondary prevention of CVD is well founded, but their expanding use in primary prevention—in individuals without documented CVD—has raised some concerns.

Abstract: Firstly, evidence suggests that, in primary prevention, statins substantially decrease CVD morbidity, but only moderately reduce CVD mortality.

Abstract: Secondly, long-term statin use might cause adverse effects, such as incident diabetes mellitus.

Abstract: Thirdly, the cost-effectiveness of such a strategy is unclear, and has to be balanced against the risk of 'overmedicating' the general population.

Abstract: Data clearly support the use of statins for primary prevention in high-risk individuals, in whom the strategy is cost-effective and the benefits exceed the risks.

Abstract: Whether primary prevention is beneficial in individuals at low or moderate risk is not certain.

Abstract: Therefore, the prescription of statins for primary prevention should be individualized on the basis of clinical judgment, particularly for low-risk individuals.

Abstract: In appropriately selected individuals, statins should also be used for primary prevention of ischaemic stroke and transient ischaemic attack.


Acetylation of apurinic/apyrimidinic endonuclease-1 regulates Helicobacter pylori-mediated gastric epithelial cell apoptosis.

Abstract: BACKGROUND & AIMS Helicobacter pylori-induced gastric epithelial cell (GEC) apoptosis is a complex process that includes activation of the tumor suppressor p53.

Abstract: p53-mediated apoptosis involves p53 activation, bax transcription, and cytochrome c release from mitochondria.

Abstract: Apurinic/apyrimidinic endonuclease-1 (APE-1) regulates transcriptional activity of p53, and H pylori induce APE-1 expression in human GECs.

Abstract: H pylori infection increases intracellular calcium ion concentration [Ca2+]i of GECs, which induces APE-1 acetylation.

Abstract: We investigated the effects of H pylori infection and APE-1 acetylation on GEC apoptosis.

Abstract: METHODS AGS cells (wild-type or with suppressed APE-1), KATO III cells, and cells isolated from gastric biopsy specimens were infected with H pylori.

Abstract: Effects were examined by immunoblotting, real-time reverse-transcription polymerase chain reaction, immunoprecipitation, immunofluorescence microscopy, chromatin immunoprecipitation, mobility shift, DNA binding, and luciferase assays.

Abstract: RESULTS H pylori infection increased [Ca2+]i and acetylation of APE-1 in GECs, but the acetylation status of APE-1 did not affect the transcriptional activity of p53.

Abstract: In GECs, expression of a form of APE-1 that could not be acetylated increased total and mitochondrial levels of Bax and induced release of cytochrome c and fragmentation of DNA; expression of wild-type APE-1 reduced these apoptotic events.

Abstract: We identified a negative calcium response element in the human bax promoter and found that poly (adenosine diphosphate-ribose) polymerase 1 recruited the acetylated APE-1/histone deacetylase-1 repressor complex to bax nCaRE.

Abstract: CONCLUSIONS H pylori-mediated acetylation of APE-1 suppresses Bax expression; this prevents p53-mediated apoptosis when H pylori infect GECs.


A beginning of the end: new insights into the functional organization of telomeres

Abstract: Ever since the first demonstration of their repetitive sequence and unique replication pathway, telomeres have beguiled researchers with how they function in protecting chromosome ends.

Abstract: Of course much has been learned over the years, and we now appreciate that telomeres are comprised of the multimeric protein/DNA shelterin complex and that the formation of t-loops provides protection from DNA damage machinery.

Abstract: Deriving their name from D-loops, t-loops are generated by the insertion of the 3' overhang into telomeric repeats facilitated by the binding of TRF2.

Abstract: Recent studies have uncovered novel forms of chromosome end-structure that may implicate telomere organization in cellular processes beyond its essential role in telomere protection and homeostasis.

Abstract: In particular, we have recently described that t-loops form in a TRF2-dependent manner at interstitial telomere repeat sequences, which we termed interstitial telomere loops (ITLs).

Abstract: These structures are also dependent on association of lamin A/C, a canonical component of the nucleoskeleton that is mutated in myriad human diseases, including human segmental progeroid syndromes.

Abstract: Since ITLs are associated with telomere stability and require functional lamin A/C, our study suggests a mechanistic link between cellular aging (replicative senescence induced by telomere shortening) and organismal aging (modeled by Hutchinson Gilford Progeria Syndrome).

Abstract: Here we speculate on other potential ramifications of ITL formation, from gene expression to genome stability to chromosome structure.


Biochemical analysis of TssK, a core component of the bacterial Type VI secretion system, reveals distinct oligomeric states of TssK and identifies a TssK–TssFG subcomplex

Abstract: Gram-negative bacteria use the Type VI secretion system (T6SS) to inject toxic proteins into rival bacteria or eukaryotic cells.

Abstract: However, the mechanism of the T6SS is incompletely understood.

Abstract: In the present study, we investigated a conserved component of the T6SS, TssK, using the antibacterial T6SS of Serratia marcescens as a model system.

Abstract: TssK was confirmed to be essential for effector secretion by the T6SS.

Abstract: The native protein, although not an integral membrane protein, appeared to localize to the inner membrane, consistent with its presence within a membrane-anchored assembly.

Abstract: Recombinant TssK purified from S. marcescens was found to exist in several stable oligomeric forms, namely trimer, hexamer and higher-order species.

Abstract: Native-level purification of TssK identified TssF and TssG as interacting proteins.

Abstract: TssF and TssG, conserved T6SS components of unknown function, were required for T6SS activity, but not for correct localization of TssK. A complex containing TssK, TssF and TssG was subsequently purified in vitro, confirming that these three proteins form a new subcomplex within the T6SS.

Abstract: Our findings provide new insight into the T6SS assembly, allowing us to propose a model whereby TssK recruits TssFG into the membrane-associated T6SS complex and different oligomeric states of TssK may contribute to the dynamic mechanism of the system.


Involvement of ER Stress in Dysmyelination of Pelizaeus-Merzbacher Disease with PLP1 Missense Mutations Shown by iPSC-Derived Oligodendrocytes

Abstract: Pelizaeus-Merzbacher disease (PMD) is a form of X-linked leukodystrophy caused by mutations in the proteolipid protein 1 (PLP1) gene.

Abstract: Although PLP1 proteins with missense mutations have been shown to accumulate in the rough endoplasmic reticulum (ER) in disease model animals and cell lines transfected with mutant PLP1 genes, the exact pathogenetic mechanism of PMD has not previously been clarified.

Abstract: In this study, we established induced pluripotent stem cells (iPSCs) from two PMD patients carrying missense mutation and differentiated them into oligodendrocytes in vitro.

Abstract: In the PMD iPSC-derived oligodendrocytes, mislocalization of mutant PLP1 proteins to the ER and an association between increased susceptibility to ER stress and increased numbers of apoptotic oligodendrocytes were observed.

Abstract: Moreover, electron microscopic analysis demonstrated drastically reduced myelin formation accompanied by abnormal ER morphology.

Abstract: Thus, this study demonstrates the involvement of ER stress in pathogenic dysmyelination in the oligodendrocytes of PMD patients with the PLP1 missense mutation.


Using Routine Surveillance Data to Estimate the Epidemic Potential of Emerging Zoonoses: Application to the Emergence of US Swine Origin Influenza A H3N2v Virus

Abstract: BACKGROUND Prior to emergence in human populations, zoonoses such as SARS cause occasional infections in human populations exposed to reservoir species.

Abstract: The risk of widespread epidemics in humans can be assessed by monitoring the reproduction number R (average number of persons infected by a human case).

Abstract: However, until now, estimating R required detailed outbreak investigations of human clusters, for which resources and expertise are not always available.

Abstract: Additionally, existing methods do not correct for important selection and under-ascertainment biases.

Abstract: Here, we present simple estimation methods that overcome many of these limitations.

Abstract: METHODS AND FINDINGS Our approach is based on a parsimonious mathematical model of disease transmission and only requires data collected through routine surveillance and standard case investigations.

Abstract: We apply it to assess the transmissibility of swine-origin influenza A H3N2v-M virus in the US, Nipah virus in Malaysia and Bangladesh, and also present a non-zoonotic example (cholera in the Dominican Republic).

Abstract: Estimation is based on two simple summary statistics, the proportion infected by the natural reservoir among detected cases (G) and among the subset of the first detected cases in each cluster (F).

Abstract: If detection of a case does not affect detection of other cases from the same cluster, we find that R can be estimated by 1-G; otherwise R can be estimated by 1-F when the case detection rate is low.

Abstract: In more general cases, bounds on R can still be derived.

Abstract: CONCLUSIONS We have developed a simple approach with limited data requirements that enables robust assessment of the risks posed by emerging zoonoses.

Abstract: We illustrate this by deriving transmissibility estimates for the H3N2v-M virus, an important step in evaluating the possible pandemic threat posed by this virus.

Abstract: Please see later in the article for the Editors' Summary.


Independently Evolving Species in Asexual Bdelloid Rotifers

Abstract: Asexuals are an important test case for theories of why species exist.

Abstract: If asexual clades displayed the same pattern of discrete variation as sexual clades, this would challenge the traditional view that sex is necessary for diversification into species.

Abstract: However, critical evidence has been lacking: all putative examples have involved organisms with recent or ongoing histories of recombination and have relied on visual interpretation of patterns of genetic and phenotypic variation rather than on formal tests of alternative evolutionary scenarios.

Abstract: Here we show that a classic asexual clade, the bdelloid rotifers, has diversified into distinct evolutionary species.

Abstract: Intensive sampling of the genus Rotaria reveals the presence of well-separated genetic clusters indicative of independent evolution.

Abstract: Moreover, combined genetic and morphological analyses reveal divergent selection in feeding morphology, indicative of niche divergence.

Abstract: Some of the morphologically coherent groups experiencing divergent selection contain several genetic clusters, in common with findings of cryptic species in sexual organisms.

Abstract: Our results show that the main causes of speciation in sexual organisms, population isolation and divergent selection, have the same qualitative effects in an asexual clade.

Abstract: The study also demonstrates how combined molecular and morphological analyses can shed new light on the evolutionary nature of species.


The Ribosome Biogenesis Factor Nol11 Is Required for Optimal rDNA Transcription and Craniofacial Development in Xenopus

Abstract: The production of ribosomes is ubiquitous and fundamental to life.

Abstract: As such, it is surprising that defects in ribosome biogenesis underlie a growing number of symptomatically distinct inherited disorders, collectively called ribosomopathies.

Abstract: We previously determined that the nucleolar protein, NOL11, is essential for optimal pre-rRNA transcription and processing in human tissue culture cells.

Abstract: However, the role of NOL11 in the development of a multicellular organism remains unknown.

Abstract: Here, we reveal a critical function for NOL11 in vertebrate ribosome biogenesis and craniofacial development.

Abstract: Nol11 is strongly expressed in the developing cranial neural crest (CNC) of both amphibians and mammals, and knockdown of Xenopus nol11 results in impaired pre-rRNA transcription and processing, increased apoptosis, and abnormal development of the craniofacial cartilages.

Abstract: Inhibition of p53 rescues this skeletal phenotype, but not the underlying ribosome biogenesis defect, demonstrating an evolutionarily conserved control mechanism through which ribosome-impaired craniofacial cells are removed.

Abstract: Excessive activation of this mechanism impairs craniofacial development.

Abstract: Together, our findings reveal a novel requirement for Nol11 in craniofacial development, present the first frog model of a ribosomopathy, and provide further insight into the clinically important relationship between specific ribosome biogenesis proteins and craniofacial cell survival.


Genomic Nucleosome Organization Reconstituted with Pure Proteins

Abstract: Chromatin remodelers regulate genes by organizing nucleosomes around promoters, but their individual contributions are obfuscated by the complex in vivo milieu of factor redundancy and indirect effects.

Abstract: Genome-wide reconstitution of promoter nucleosome organization with purified proteins resolves this problem and is therefore a critical goal.

Abstract: Here, we reconstitute four stages of nucleosome architecture using purified components: yeast genomic DNA, histones, sequence-specific Abf1/Reb1, and remodelers RSC, ISW2, INO80, and ISW1a.

Abstract: We identify direct, specific, and sufficient contributions that in vivo observations validate.

Abstract: First, RSC clears promoters by translating poly(dA:dT) into directional nucleosome removal.

Abstract: Second, partial redundancy is recapitulated where INO80 alone, or ISW2 at Abf1/Reb1sites, positions +1 nucleosomes.

Abstract: Third, INO80 and ISW2 each align downstream nucleosomal arrays.

Abstract: Fourth, ISW1a tightens the spacing to canonical repeat lengths.

Abstract: Such a minimal set of rules and proteins establishes core mechanisms by which promoter chromatin architecture arises through a blend of redundancy and specialization.


Identification of splenic reservoir monocytes and their deployment to inflammatory sites.

Abstract: A current paradigm states that monocytes circulate freely and patrol blood vessels but differentiate irreversibly into dendritic cells (DCs) or macrophages upon tissue entry.

Abstract: Here we show that bona fide undifferentiated monocytes reside in the spleen and outnumber their equivalents in circulation.

Abstract: The reservoir monocytes assemble in clusters in the cords of the subcapsular red pulp and are distinct from macrophages and DCs.

Abstract: In response to ischemic myocardial injury, splenic monocytes increase their motility, exit the spleen en masse, accumulate in injured tissue, and participate in wound healing.

Abstract: These observations uncover a role for the spleen as a site for storage and rapid deployment of monocytes and identify splenic monocytes as a resource that the body exploits to regulate inflammation.


Prox1 Is Required for Granule Cell Maturation and Intermediate Progenitor Maintenance During Brain Neurogenesis

Abstract: The dentate gyrus has an important role in learning and memory, and adult neurogenesis in the subgranular zone of the dentate gyrus may play a role in the acquisition of new memories.

Abstract: The homeobox gene Prox1 is expressed in the dentate gyrus during embryonic development and adult neurogenesis.

Abstract: Here we show that Prox1 is necessary for the maturation of granule cells in the dentate gyrus during development and for the maintenance of intermediate progenitors during adult neurogenesis.

Abstract: We also demonstrate that Prox1-expressing intermediate progenitors are required for adult neural stem cell self-maintenance in the subgranular zone; thus, we have identified a previously unknown non-cell autonomous regulatory feedback mechanism that controls adult neurogenesis in this region of the mammalian brain.

Abstract: Finally, we show that the ectopic expression of Prox1 induces premature differentiation of neural stem cells.


The abbreviated pluripotent cell cycle.

Abstract: Human embryonic stem cells (hESCs) and induced pluripotent stem cells proliferate rapidly and divide symmetrically producing equivalent progeny cells.

Abstract: In contrast, lineage committed cells acquire an extended symmetrical cell cycle.

Abstract: Self-renewal of tissue-specific stem cells is sustained by asymmetric cell division where one progeny cell remains a progenitor while the partner progeny cell exits the cell cycle and differentiates.

Abstract: There are three principal contexts for considering the operation and regulation of the pluripotent cell cycle: temporal, regulatory, and structural.

Abstract: The primary temporal context that the pluripotent self-renewal cell cycle of hESCs is a short G1 period without reducing periods of time allocated to S phase, G2, and mitosis.

Abstract: The rules that govern proliferation in hESCs remain to be comprehensively established.

Abstract: However, several lines of evidence suggest a key role for the naïve transcriptome of hESCs, which is competent to stringently regulate the embryonic stem cell (ESC) cell cycle.

Abstract: This supports the requirements of pluripotent cells to self-propagate while suppressing expression of genes that confer lineage commitment and/or tissue specificity.

Abstract: However, for the first time, we consider unique dimensions to the architectural organization and assembly of regulatory machinery for gene expression in nuclear microenviornments that define parameters of pluripotency.

Abstract: From both fundamental biological and clinical perspectives, understanding control of the abbreviated ESC cycle can provide options to coordinate control of proliferation versus differentiation.

Abstract: Wound healing, tissue engineering, and cell-based therapy to mitigate developmental aberrations illustrate applications that benefit from knowledge of the biology of the pluripotent cell cycle.


Senescent growth arrest in mesenchymal stem cells is bypassed by Wip1-mediated downregulation of intrinsic stress signaling pathways.

Abstract: Human mesenchymal stem cells (hMSCs) have been widely studied as a source of primary adult stem cells for cell therapy because of their multidifferentiation potential; however, the growth arrest (also known as "premature senescence") often found in hMSCs cultured in vitro has been a major obstacle to the in-depth characterization of these cells.

Abstract: In addition, the inability to maintain constant cell growth hampers the development of additional genetic modifications aimed at achieving desired levels of differentiation to specific tissues; however, the molecular mechanisms that govern this phenomenon remain unclear, with the exception of a few studies demonstrating that induction of p16INK4a is responsible for this senescence-like event.

Abstract: Here, we observed that the premature growth arrest in hMSCs occurs in parallel with the induction of p16INK4a, following abrogation of inhibitory phosphorylation of retinoblastoma protein.

Abstract: These stress responses were concurrent with increased formation of reactive oxygen species (ROSs) from mitochondria and increased p38 mitogen-activated protein kinase (MAPK) activity.

Abstract: The introduction of Wip1 (wild-type p53 inducible phosphatase-1), a well-studied stress modulator, significantly lowered p16INK4a expression and led to p38 MAPK inactivation, although it failed to affect the levels of ROSs.

Abstract: Moreover, the suppression of stress responses by Wip1 apparently extended the life span of hMSCs, compared with control conditions, while maintaining their multilineage differentiation potential.

Abstract: Based on these results, we suggest that senescent growth arrest in hMSCs may result from activation of stress signaling pathways and consequent onset of stress responses, due in part to ROS production during prolonged in vitro culture.


Understanding the Odd Science of Aging

Abstract: Evolutionary considerations suggest aging is caused not by active gene programming but by evolved limitations in somatic maintenance, resulting in a build-up of damage.

Abstract: Ecological factors such as hazard rates and food availability influence the trade-offs between investing in growth, reproduction, and somatic survival, explaining why species evolved different life spans and why aging rate can sometimes be altered, for example, by dietary restriction.

Abstract: To understand the cell and molecular basis of aging is to unravel the multiplicity of mechanisms causing damage to accumulate and the complex array of systems working to keep damage at bay.


Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis.

Abstract: Mononuclear phagocytes, including monocytes, macrophages, and dendritic cells, contribute to tissue integrity as well as to innate and adaptive immune defense.

Abstract: Emerging evidence for labor division indicates that manipulation of these cells could bear therapeutic potential.

Abstract: However, specific ontogenies of individual populations and the overall functional organization of this cellular network are not well defined.

Abstract: Here we report a fate-mapping study of the murine monocyte and macrophage compartment taking advantage of constitutive and conditional CX(3)CR1 promoter-driven Cre recombinase expression.

Abstract: We have demonstrated that major tissue-resident macrophage populations, including liver Kupffer cells and lung alveolar, splenic, and peritoneal macrophages, are established prior to birth and maintain themselves subsequently during adulthood independent of replenishment by blood monocytes.

Abstract: Furthermore, we have established that short-lived Ly6C(+) monocytes constitute obligatory steady-state precursors of blood-resident Ly6C(-) cells and that the abundance of Ly6C(+) blood monocytes dynamically controls the circulation lifespan of their progeny.


Dealing with substantial heterogeneity in Cochrane reviews. Cross-sectional study

Abstract: BACKGROUND Dealing with heterogeneity in meta-analyses is often tricky, and there is only limited advice for authors on what to do.

Abstract: We investigated how authors addressed different degrees of heterogeneity, in particular whether they used a fixed effect model, which assumes that all the included studies are estimating the same true effect, or a random effects model where this is not assumed.

Abstract: METHODS We sampled randomly 60 Cochrane reviews from 2008, which presented a result in its first meta-analysis with substantial heterogeneity (I2 greater than 50%, i.e. more than 50% of the variation is due to heterogeneity rather than chance).

Abstract: We extracted information on choice of statistical model, how the authors had handled the heterogeneity, and assessed the methodological quality of the reviews in relation to this.

Abstract: RESULTS The distribution of heterogeneity was rather uniform in the whole I2 interval, 50-100%.

Abstract: A fixed effect model was used in 33 reviews (55%), but there was no correlation between I2 and choice of model (P = 0.79).

Abstract: We considered that 20 reviews (33%), 16 of which had used a fixed effect model, had major problems.

Abstract: The most common problems were: use of a fixed effect model and lack of rationale for choice of that model, lack of comment on even severe heterogeneity and of reservations and explanations of its likely causes.

Abstract: The problematic reviews had significantly fewer included trials than other reviews (4.3 vs. 8.0, P = 0.024).

Abstract: The problems became less pronounced with time, as those reviews that were most recently updated more often used a random effects model.

Abstract: CONCLUSION One-third of Cochrane reviews with substantial heterogeneity had major problems in relation to their handling of heterogeneity.

Abstract: More attention is needed to this issue, as the problems we identified can be essential for the conclusions of the reviews.


Antagonistic Controls of Autophagy and Glycogen Accumulation by Snf1p, the Yeast Homolog of AMP-Activated Protein Kinase, and the Cyclin-Dependent

Abstract: In the yeast Saccharomyces cerevisiae, glycogen is accumulated as a carbohydrate reserve when cells are deprived of nutrients.

Abstract: Yeast mutated in SNF1, a gene encoding a protein kinase required for glucose derepression, has diminished glycogen accumulation and concomitant inactivation of glycogen synthase.

Abstract: Restoration of synthesis in an snf1 strain results only in transient glycogen accumulation, implying the existence of other SNF1-dependent controls of glycogen storage.

Abstract: A genetic screen revealed that two genes involved in autophagy, APG1 and APG13, may be regulated by SNF1.

Abstract: Increased autophagic activity was observed in wild-type cells entering the stationary phase, but this induction was impaired in an snf1 strain.

Abstract: Mutants defective for autophagy were able to synthesize glycogen upon approaching the stationary phase, but were unable to maintain their glycogen stores, because subsequent synthesis was impaired and degradation by phosphorylase, Gph1p, was enhanced.

Abstract: Thus, deletion of GPH1 partially reversed the loss of glycogen accumulation in autophagy mutants.

Abstract: Loss of the vacuolar glucosidase, SGA1, also protected glycogen stores, but only very late in the stationary phase.

Abstract: Gph1p and Sga1p may therefore degrade physically distinct pools of glycogen.

Abstract: Pho85p is a cyclin-dependent protein kinase that antagonizes SNF1 control of glycogen synthesis.

Abstract: Induction of autophagy in pho85 mutants entering the stationary phase was exaggerated compared to the level in wild-type cells, but was blocked in apg1 pho85 mutants.

Abstract: We propose that Snf1p and Pho85p are, respectively, positive and negative regulators of autophagy, probably via Apg1 and/or Apg13.

Abstract: Defective glycogen storage in snf1 cells can be attributed to both defective synthesis upon entry into stationary phase and impaired maintenance of glycogen levels caused by the lack of autophagy.


Preferential binding of a kinesin-1 motor to GTP-tubulin–rich microtubules underlies polarized vesicle transport

Abstract: Polarized transport in neurons is fundamental for the formation of neuronal circuitry.

Abstract: A motor domain-containing truncated KIF5 (a kinesin-1) recognizes axonal microtubules, which are enriched in EB1 binding sites, and selectively accumulates at the tips of axons.

Abstract: However, it remains unknown what cue KIF5 recognizes to result in this selective accumulation.

Abstract: We found that axonal microtubules were preferentially stained by the anti-GTP-tubulin antibody hMB11.

Abstract: Super-resolution microscopy combined with EM immunocytochemistry revealed that hMB11 was localized at KIF5 attachment sites.

Abstract: In addition, EB1, which binds preferentially to guanylyl-methylene-diphosphate (GMPCPP) microtubules in vitro, recognized hMB11 binding sites on axonal microtubules.

Abstract: Further, expression of hMB11 antibody in neurons disrupted the selective accumulation of truncated KIF5 in the axon tips.

Abstract: In vitro studies revealed approximately threefold stronger binding of KIF5 motor head to GMPCPP microtubules than to GDP microtubules.

Abstract: Collectively, these data suggest that the abundance of GTP-tubulin in axonal microtubules may underlie selective KIF5 localization and polarized axonal vesicular transport.


Developmental biology of the pancreas.

Abstract: The pancreas is an organ containing two distinct populations of cells, the exocrine cells that secrete enzymes into the digestive tract, and the endocrine cells that secrete hormones into the bloodstream.

Abstract: It arises from the endoderm as a dorsal and a ventral bud which fuse together to form the single organ.

Abstract: Mammals, birds, reptiles and amphibians have a pancreas with similar histology and mode of development, while in some fish, the islet cells are segregated as Brockmann bodies.

Abstract: Invertebrates do not have a pancreas, but comparable endocrine cells may be found in the gut or the brain.

Abstract: The early pancreatic bud shows uniform expression of the homeobox gene IPF-1 (also known as IDX-1, STF-1 or PDX), which when mutated to inactivity leads to total absence of the organ.

Abstract: The occurrence of heterotopic pancreas in the embryo, and also the metaplasias that can be displayed by a regenerating pancreas in the adult, both suggest that only a few gene products distinguish the pancreatic cell state from that of the surrounding tissues of duodenum, gall bladder and liver.

Abstract: In the developing pancreatic buds, the endocrine cells start to differentiate before the exocrine cells, and co-expression of different hormones by the same cell is often observed at early stages.

Abstract: Although pancreatic endocrine cells produce many gene products also characteristic of neurons, evidence from in vitro cultures and from quailchick grafts shows that they are of endogenous and not of neural crest origin.

Abstract: Observational studies suggest strongly that both endocrine and exocrine cells arise from the same endodermal rudiment.

Abstract: Development of the pancreas in embryonic life requires a trophic stimulus from the associated mesenchyme.

Abstract: In postnatal life, all cell types in the pancreas continue to grow.

Abstract: Destruction of acinar tissue by duct ligation or ethionine treatment is followed by rapid regeneration.

Abstract: Surgical removal of parts of the pancreas is followed by moderate but incomplete regeneration of both acini and islets.

Abstract: Poisoning with alloxan or streptozotocin can lead to permanent depletion of beta cells.

Abstract: Although the cell kinetics of the pancreas are not understood, it seems likely that there is a continuous slow turnover of cells, fed from a stem cells population in the ducts, and that the controls on the production rate of each cell type are local rather than systemic.


Long term pharmacotherapy for obesity and overweight: updated meta-analysis.

Abstract: OBJECTIVE To summarise the long term efficacy of anti-obesity drugs in reducing weight and improving health status.

Abstract: DESIGN Updated meta-analysis of randomised trials.

Abstract: DATA SOURCES Medline, Embase, the Cochrane controlled trials register, the Current Science meta-register of controlled trials, and reference lists of identified articles.

Abstract: All data sources were searched from December 2002 (end date of last search) to December 2006.

Abstract: STUDIES REVIEWED Double blind randomised placebo controlled trials of approved anti-obesity drugs used in adults (age over 18) for one year or longer.

Abstract: RESULTS 30 trials of one to four years' duration met the inclusion criteria: 16 orlistat (n=10 631 participants), 10 sibutramine (n=2623), and four rimonabant (n=6365).

Abstract: Of these, 14 trials were new and 16 had previously been identified.

Abstract: Attrition rates averaged 30-40%.

Abstract: Compared with placebo, orlistat reduced weight by 2.9 kg (95% confidence interval 2.5 kg to 3.2 kg), sibutramine by 4.2 kg (3.6 kg to 4.7 kg), and rimonabant by 4.7 kg (4.1 kg to 5.3 kg).

Abstract: Patients receiving active drug treatment were significantly more likely to achieve 5% and 10% weight loss thresholds.

Abstract: Orlistat reduced the incidence of diabetes and improved concentrations of total cholesterol and low density lipoprotein cholesterol, blood pressure, and glycaemic control in patients with diabetes but increased rates of gastrointestinal side effects and slightly lowered concentrations of high density lipoprotein.

Abstract: Sibutramine improved [corrected] concentrations of high density lipoprotein cholesterol and triglycerides [corrected] Rimonabant improved concentrations of high density lipoprotein cholesterol and triglycerides, blood pressure, and glycaemic control in patients with diabetes but increased the risk of mood disorders.

Abstract: CONCLUSIONS Orlistat, sibutramine, and rimonabant modestly reduce weight, have differing effects on cardiovascular risk profiles, and have specific adverse effects.


The centrosome cycle: Centriole biogenesis, duplication and inherent asymmetries

Abstract: Centrosomes are microtubule-organizing centres of animal cells.

Abstract: They influence the morphology of the microtubule cytoskeleton, function as the base for the primary cilium and serve as a nexus for important signalling pathways.

Abstract: At the core of a typical centrosome are two cylindrical microtubule-based structures termed centrioles, which recruit a matrix of associated pericentriolar material.

Abstract: Cells begin the cell cycle with exactly one centrosome, and the duplication of centrioles is constrained such that it occurs only once per cell cycle and at a specific site in the cell.

Abstract: As a result of this duplication mechanism, the two centrioles differ in age and maturity, and thus have different functions; for example, the older of the two centrioles can initiate the formation of a ciliary axoneme.

Abstract: We discuss spatial aspects of the centrosome duplication cycle, the mechanism of centriole assembly and the possible consequences of the inherent asymmetry of centrioles and centrosomes.


Osteoclasts control reactivation of dormant myeloma cells by remodelling the endosteal niche

Abstract: Multiple myeloma is largely incurable, despite development of therapies that target myeloma cell-intrinsic pathways.

Abstract: Disease relapse is thought to originate from dormant myeloma cells, localized in specialized niches, which resist therapy and repopulate the tumour.

Abstract: However, little is known about the niche, and how it exerts cell-extrinsic control over myeloma cell dormancy and reactivation.

Abstract: In this study, we track individual myeloma cells by intravital imaging as they colonize the endosteal niche, enter a dormant state and subsequently become activated to form colonies.

Abstract: We demonstrate that dormancy is a reversible state that is switched 'on' by engagement with bone-lining cells or osteoblasts, and switched 'off' by osteoclasts remodelling the endosteal niche.

Abstract: Dormant myeloma cells are resistant to chemotherapy that targets dividing cells.

Abstract: The demonstration that the endosteal niche is pivotal in controlling myeloma cell dormancy highlights the potential for targeting cell-extrinsic mechanisms to overcome cell-intrinsic drug resistance and prevent disease relapse.


Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs.

Abstract: Human and mouse embryonic stem cells (ESCs) are derived from blastocyst-stage embryos but have very different biological properties, and molecular analyses suggest that the pluripotent state of human ESCs isolated so far corresponds to that of mouse-derived epiblast stem cells (EpiSCs).

Abstract: Here we rewire the identity of conventional human ESCs into a more immature state that extensively shares defining features with pluripotent mouse ESCs.

Abstract: This was achieved by ectopic induction of Oct4, Klf4, and Klf2 factors combined with LIF and inhibitors of glycogen synthase kinase 3beta (GSK3beta) and mitogen-activated protein kinase (ERK1/2) pathway.

Abstract: Forskolin, a protein kinase A pathway agonist which can induce Klf4 and Klf2 expression, transiently substitutes for the requirement for ectopic transgene expression.

Abstract: In contrast to conventional human ESCs, these epigenetically converted cells have growth properties, an X-chromosome activation state (XaXa), a gene expression profile, and a signaling pathway dependence that are highly similar to those of mouse ESCs.

Abstract: Finally, the same growth conditions allow the derivation of human induced pluripotent stem (iPS) cells with similar properties as mouse iPS cells.

Abstract: The generation of validated "naïve" human ESCs will allow the molecular dissection of a previously undefined pluripotent state in humans and may open up new opportunities for patient-specific, disease-relevant research.


IDEAL in meshes for prolapse, urinary incontinence, and hernia repair.

Abstract: PURPOSE Mesh surgeries are counted among the most frequently applied surgical procedures.

Abstract: Despite global spread of mesh applying surgeries, there is no current systematic analysis of incidence and possible prevention of adverse events after mesh implantation.

Abstract: MATERIALS AND METHODS Based on the recommendations of IDEAL an in vitro test system for biocompatibility of surgical meshes has been generated (Innovation).

Abstract: Coating strategies for biocompatibility optimization have been developed (Development).

Abstract: The native and modified alloplastic materials have been tested in an animal model over 2 years (Exploration and Assessment and Long-term study).

Abstract: RESULTS In 3 meshes, implanted in sheep and explanted at 4 different time points (a, 3 months; b, 6 months; c, 12 months; and d, 24 months) over 24 months, thickness of inflammatory tissue (TVT a, 35 µm; b, 32 µm; c, 33 µm; d, 28 µm; UltraPro, a, 25 µm; b, 24 µm; c, 21 µm; d, 22 µm; PVDF a, 20 µm; b, 21 µm; c, 14 µm; d, 15µm), connective tissue (TVT a, 37 µm; b, 36 µm; c, 43 µm; d, 41 µm; UltraPro a, 33 µm; b, 32 µm; c, 40 µm; d, 38 µm; PVDF a, 25 µm; b, 22 µm; c, 22 µm; d, 24 µm), and macrophage infiltration (TVT a, 36%; b, 33%; c, 23%; d, 20%; UltraPro a, 34%; b, 28%; c, 25%; d, 22%; PVDF a, 24%; b, 18%; c, 18%; d, 16%) revealed comparable ranking characteristics at every time point after explantation.

Abstract: The in vivo performance of these meshes in a sheep model was predictable with a previously developed in vitro test system.

Abstract: Coating of meshes with autologous plasma prior to implantation seems to have a positive effect on the meshes biocompatibility.

Abstract: CONCLUSION We have applied IDEAL criteria on a new innovation for surgical meshes.

Abstract: The results permit the generation of a ranking of currently available meshes with potential to optimize future meshes.


Heterotopic of bone marrow. Analysis of precursor cells for osteogenic and hematopoietic tissues.

Abstract: In semisyngeneic heterotopic bone marrow transplants the donor or recipient origin of cells of osteogenic and hematopoietic tissues was identified by chromosome markers (T6) and by reverse transplantation into the initial donor line.

Abstract: In syngeneic and semisyngeneic grafts of bone marrow under the renal capsule bone and bone marrow are formed.

Abstract: In allogeneic grafts only bone is formed; this bone is subsequently resorbed.

Abstract: In 14-month semisyngeneic transplants the bone marrow consists of recipient cells.

Abstract: This is true for both the proliferating pool and the stem cells of hematopoietic tissue.

Abstract: At the same time, osteogenic precursor cells and bone tissue in these transplants are of donor origin.

Abstract: A discussion is presented of the interrelationship between determinated osteogenic precursor cells (preosteoblasts) and hematopoietic stem cells (or their descendants) in which osteogenesis is inducible.


TRPM7 is required for breast tumor cell metastasis.

Abstract: TRPM7 encodes a Ca2+-permeable nonselective cation channel with kinase activity.

Abstract: TRPM7 has been implicated in control of cell adhesion and migration, but whether TRPM7 activity contributes to cancer progression has not been established.

Abstract: Here we report that high levels of TRPM7 expression independently predict poor outcome in breast cancer patients and that it is functionally required for metastasis formation in a mouse xenograft model of human breast cancer.

Abstract: Mechanistic investigation revealed that TRPM7 regulated myosin II-based cellular tension, thereby modifying focal adhesion number, cell-cell adhesion and polarized cell movement.

Abstract: Our findings therefore suggest that TRPM7 is part of a mechanosensory complex adopted by cancer cells to drive metastasis formation.